PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010235P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family RAV
Protein Properties Length: 339aa    MW: 38583.4 Da    PI: 8.4583
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010235P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.32.5e-104491154
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                    s++kGV    ++g W A+I+       + +r++lg+f +++eAa a++ a+ +++
  MELO3C010235P1 44 SKFKGVV-PQQNGHWGAQIYA------NhQRIWLGTFKSENEAAMAYDSAAIRIR 91
                    799***6.666899****999......44**********************9987 PP
2B386.13.1e-27167271190
                     EEEE-..-HHHHTT-EE--HHH.HTT.............---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.............ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                     f+k+ltpsdv+k++rlv+pkk+a ++                     ++++l++ d+  r+W+++++y+k+s++yv+t+GW++Fvk+++Lk++D+
  MELO3C010235P1 167 FQKELTPSDVGKLNRLVIPKKYAVKYfpqisasttenveP---VdddRDVQLVFFDKMMRQWKFRYCYWKSSQSYVFTRGWNRFVKEKQLKANDT 258
                     99**************************998887765552...044488999999**************************************** PP

                     EEEEE-SS..SEE CS
              B3  80 vvFkldgr..sef 90 
                     + F+l +   s+ 
  MELO3C010235P1 259 IAFYLCEAasSDS 271
                     ****874323444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.62E-2344102No hitNo description
PfamPF008472.2E-54491IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-1544101IPR016177DNA-binding domain
SMARTSM003805.0E-1845106IPR001471AP2/ERF domain
PROSITE profilePS5103216.60845100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-1745100IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.5E-33161268IPR015300DNA-binding pseudobarrel domain
CDDcd100172.77E-25166277No hitNo description
SuperFamilySSF1019363.66E-27166277IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.225167281IPR003340B3 DNA binding domain
SMARTSM010195.1E-22167281IPR003340B3 DNA binding domain
PfamPF023629.7E-25167277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MKQELSSMIS KARTNAVGDT LDSSCITCPL PTNGCSRQGR SLTSKFKGVV PQQNGHWGAQ  60
IYANHQRIWL GTFKSENEAA MAYDSAAIRI RSGDCHRNFP WTKFTIEEPN FQKLYTTETL  120
LNMIKDGSYR TKFSEYLRDC SESTQTSVSP STEKAHNNGG TSIKQLFQKE LTPSDVGKLN  180
RLVIPKKYAV KYFPQISAST TENVEPVDDD RDVQLVFFDK MMRQWKFRYC YWKSSQSYVF  240
TRGWNRFVKE KQLKANDTIA FYLCEAASSD SKTTFCVVDV NNRDNSGGLV ENETTCSELQ  300
LNLRHGEVEE SVSPKHIDNE LKDEREVKGF KLFGVHIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2716626113100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818080.0LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443869.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6P51e-107RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A1S3B9090.0A0A1S3B909_CUCME; AP2/ERF and B3 domain-containing transcription factor At1g50680-like
STRINGXP_008443869.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-109RAV family protein