PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C010330P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

YABBY

Protein Properties

Length: 142aa MW: 16021.1 Da PI: 9.2023

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C010330P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	132.9	3.9e-41	43	115	99	170
YABBY 99 eklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +k++ +p + v+rPPekrqrvPsayn+fikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl MELO3C010330P1 43 NKMEIRVPTTIPAEERvVNRPPEKRQRVPSAYNQFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPRIHFGL 115 344555555566555559*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.8E-40	32	115	IPR006780	YABBY protein
SuperFamily	SSF47095	1.83E-8	50	108	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.5E-4	63	109	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MAAAFHSLSW QDVQVPSYNL YGCNGADFQG DFGSSSKCNN NINKMEIRVP TTIPAEERVV 60 NRPPEKRQRV PSAYNQFIKE EIQRIKASNP EISHREAFST AAKNWAHFPR IHFGLMLETN 120 NQVKLDDGSE RLMSRAALLN K*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681808	7e-76	LN681808.1 Cucumis melo genomic scaffold, anchoredscaffold00012.
GenBank	LN713256	7e-76	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016899792.1	1e-103	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	2e-45	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1S4DUX7	1e-101	A0A1S4DUX7_CUCME; axial regulator YABBY 5-like
STRING	XP_008444049.1	1e-102	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-47	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]