PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010678P3
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TALE
Protein Properties Length: 131aa    MW: 15167.2 Da    PI: 9.074
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010678P3genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.4e-10711052155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yp+++++  LA+ +gL+ +q+ +WF N+R ++
  MELO3C010678P3  71 KWPYPTEADKVALAETTGLDPKQINNWFINQRKRH 105
                     569*****************************985 PP
2ELK22.52.6e-082646222
             ELK  2 LKhqLlrKYsgyLgsLkqEFs 22
                    LK++Ll  ++g++g+Lk EFs
  MELO3C010678P3 26 LKDMLLSRFGGHIGTLKLEFS 46
                    9*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011885.3E-42546IPR005539ELK domain
PfamPF037891.5E-72646IPR005539ELK domain
PROSITE profilePS5007112.40645108IPR001356Homeobox domain
SuperFamilySSF466892.4E-1946115IPR009057Homeodomain-like
SMARTSM003895.9E-1247112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-2750109IPR009057Homeodomain-like
PfamPF059202.2E-1765104IPR008422Homeobox KN domain
CDDcd000863.62E-1171109No hitNo description
PROSITE patternPS00027083106IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 131 aa     Download sequence    Send to blast
MSSDDELNCG ERELQDGQMR LEDKGLKDML LSRFGGHIGT LKLEFSKKKK KGKLPKEGRK  60
VLLEWWDVHY KWPYPTEADK VALAETTGLD PKQINNWFIN QRKRHWKPSE SMQFGNIDNT  120
AEQFSARLDS *
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-125LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-125LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444355.14e-92PREDICTED: homeobox protein knotted-1-like 6
SwissprotQ84JS63e-51KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A1S3BA778e-91A0A1S3BA77_CUCME; homeobox protein knotted-1-like 6
STRINGXP_008444355.11e-91(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.28e-42KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]