PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010773P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 207aa    MW: 23297.5 Da    PI: 8.6828
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010773P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.6e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+++Ed +l+ +v+ +G   tW + + + g++R++k+c++rw++yl
   MELO3C010773P1 14 KGPWSPDEDAILKSYVETHGIAgTWIALPTKAGLKRCGKSCRLRWLNYL 62
                     79******************889************************97 PP
2Myb_DNA-binding51.52.3e-1669114246
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd  + ++ +q+G++  +W+tIa+ ++ gRt++++k++w++
   MELO3C010773P1  69 GEFTEEEDNVIFNLYNQYGSRqvRWSTIASQLP-GRTDNDVKNHWNT 114
                      78*******************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.236962IPR017930Myb domain
SuperFamilySSF466891.91E-2512112IPR009057Homeodomain-like
SMARTSM007176.4E-91364IPR001005SANT/Myb domain
PfamPF002492.9E-121462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-231569IPR009057Homeodomain-like
CDDcd001676.49E-71662No hitNo description
PROSITE profilePS5129423.37663120IPR017930Myb domain
SMARTSM007172.9E-1367118IPR001005SANT/Myb domain
PfamPF002497.8E-1469114IPR001005SANT/Myb domain
CDDcd001674.89E-1270114No hitNo description
Gene3DG3DSA:1.10.10.608.2E-2370119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MGRAPCCEKG KVKKGPWSPD EDAILKSYVE THGIAGTWIA LPTKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTEEEDNVIF NLYNQYGSRQ VRWSTIASQL PGRTDNDVKN HWNTKLKKKK  120
KLFLAAKTKS HLHSQSPLLH APQTEFTEII NHTPISCIAA LHNSVDQFQI PTVSEPDPGS  180
DSRDHWGSTE PWGCDFPADI ICSMLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-23141197107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115121LKKKKKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444504.11e-139PREDICTED: transcription factor RAX3-like
SwissprotQ9SJL79e-61RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A1S3BB791e-138A0A1S3BB79_CUCME; transcription factor RAX3-like
STRINGXP_008444504.11e-139(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.15e-59myb domain protein 84
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]