PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010881P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 231aa    MW: 26021.9 Da    PI: 10.1232
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010881P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.43.3e-15129218299
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +k +++s+v+   +l lp +f+++h  +k+    +tl de+g ++ + +  rk++    +++GWk+F  a++L +gD vvF++++   + ++v +
  MELO3C010881P1 129 IKSMVRSHVSGCFWLGLPSHFCKTHL-PKND-GVMTLIDEDGDEYPIIYLARKTG----FSGGWKGFSIAHKLADGDAVVFQHIK--PTACKVYI 215
                     6999******************9993.3333.37***************555555....99*********************876..55578998 PP

                     E-S CS
              B3  97 frk 99 
                     fr 
  MELO3C010881P1 216 FRV 218
                     885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-19121219IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-23121220IPR015300DNA-binding pseudobarrel domain
CDDcd100171.65E-24126217No hitNo description
SMARTSM010198.7E-22128219IPR003340B3 DNA binding domain
PROSITE profilePS5086310.926128219IPR003340B3 DNA binding domain
PfamPF023627.5E-13129218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGISNLSYEE CRQKRVEENK KRMEALNLPL LSQALLDSSP SKSSPSKQVK PRVMQKQLVV  60
VRRSSRVAKQ PTPVYAEVLV DRVAIPRRIS RARDFSDQFY ASDEARKKKA FERALELQSR  120
LEPNYPSCIK SMVRSHVSGC FWLGLPSHFC KTHLPKNDGV MTLIDEDGDE YPIIYLARKT  180
GFSGGWKGFS IAHKLADGDA VVFQHIKPTA CKVYIFRVNG SKQESDSNNS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-114LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-114LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022144315.11e-131B3 domain-containing protein At5g42700-like
SwissprotQ9FMZ43e-66Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBLA0A0A0LKX31e-134A0A0A0LKX3_CUCSA; Uncharacterized protein
STRINGXP_004160008.11e-155(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.13e-58B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]