PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010905P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 226aa    MW: 25515.8 Da    PI: 8.1988
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010905P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.82.6e-20251041398
                     TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++lv+p kf   +++k++ + t+tl+ +sg +W+v l  + ++++  +++GW+eFvka+ L+++D +vF+++g+s+f   v +f+
  MELO3C010905P2  25 EQQLVIPDKFS--NNLKNKLPATVTLKGPSGATWDVGL--STSDDKLCFKRGWQEFVKAHYLEQNDLLVFRYNGTSQF--DVLIFD 104
                     678*******7..444556999****************..*********************************99999..777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575124No hitNo description
SuperFamilySSF1019362.16E-2212106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.25613106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-2315104IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-1016106IPR003340B3 DNA binding domain
PfamPF023623.0E-1726103IPR003340B3 DNA binding domain
CDDcd100171.28E-2027104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGRGYLLEPF SKFTHFYQIL AGGCEQQLVI PDKFSNNLKN KLPATVTLKG PSGATWDVGL  60
STSDDKLCFK RGWQEFVKAH YLEQNDLLVF RYNGTSQFDV LIFDWKSFCE KEASYFVKIC  120
ENKKIDSGGQ AKRKLREPSL DGFDVNINNG AECDSSENII HDDSMERMIQ DVVSKATNFN  180
GQPEVFSAEP IRTVQTRRKK KTPNNTAIIS TPEPVQLSGS WRRNS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444660.11e-151PREDICTED: B3 domain-containing protein REM16-like
TrEMBLA0A1S3BAT71e-150A0A1S3BAT7_CUCME; B3 domain-containing protein REM16-like
STRINGXP_008444660.11e-151(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-36B3 family protein