PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010905P3
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 166aa    MW: 18700.4 Da    PI: 9.9925
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010905P3genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.71.2e-1444138196
                     EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.... CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef..el 92 
                     f+ v+ ps+v ++  l +p + ++++ +    ++++++l+   + +W  k++++ +++   lt+GWk+F  +n+L+e D++vF+ +++s++   l
  MELO3C010905P3  44 FKVVMRPSHVYRRFFLFIPTQWVTKNlS-L--RNQDIILRV-GSDEWPTKFNFTPSRQCGGLTSGWKHFSIDNNLEEFDVCVFEPVNKSSGpvVL 134
                     778999********************53.3..344677766.6688999998877777777***********************77554440044 PP

                     EEEE CS
              B3  93 vvkv 96 
                      vk+
  MELO3C010905P3 135 EVKI 138
                     5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.1E-1841140IPR015300DNA-binding pseudobarrel domain
PfamPF023624.0E-1344140IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-1744132IPR015300DNA-binding pseudobarrel domain
CDDcd100172.50E-2044140No hitNo description
SMARTSM010199.0E-1444142IPR003340B3 DNA binding domain
PROSITE profilePS5086311.43444142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MEATPVKKIG SYVEQYVSHR RAITEGEKNN ALKLAEAASS DTGFKVVMRP SHVYRRFFLF  60
IPTQWVTKNL SLRNQDIILR VGSDEWPTKF NFTPSRQCGG LTSGWKHFSI DNNLEEFDVC  120
VFEPVNKSSG PVVLEVKIFR VVEDVIPLTR VASKSNRKPT KAPEA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-161214516146B3 domain-containing transcription factor VRN1
4i1k_B2e-161214516146B3 domain-containing transcription factor VRN1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-180LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-180LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444660.11e-117PREDICTED: B3 domain-containing protein REM16-like
TrEMBLA0A1S3BAT71e-116A0A1S3BAT7_CUCME; B3 domain-containing protein REM16-like
STRINGXP_008444660.11e-116(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-32B3 family protein