PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C010923P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 395aa    MW: 43905.1 Da    PI: 5.3246
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C010923P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM29.12.8e-092711819128
             NAM  19 LkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgra 113
                     Lk+ ++g +l++   + +++ y++ P+ Lp       + ++f+++ + ++      +   + + Wk +g   +++s +++  g ++t  +y+g+a
  MELO3C010923P1  27 LKRILRGGPLPA--NVLDINPYQCRPEMLP-------DGVWFYAEFHGNA-----DS---SFSPWKPKGGAFKLYS-DSSFSGWRTTYEYYEGQA 103
                     555556666555..4667777777777777.......2344555443322.....22...2346************.9999************** PP

             NAM 114 pkgektdWvmheyrl 128
                     p+  kt Wvm+ey +
  MELO3C010923P1 104 PQECKTAWVMQEYWM 118
                     *************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.81510141IPR003441NAC domain
SuperFamilySSF1019414.32E-1719140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MTPSPVTSLA MPMLDLFSSD EETFLALKRI LRGGPLPANV LDINPYQCRP EMLPDGVWFY  60
AEFHGNADSS FSPWKPKGGA FKLYSDSSFS GWRTTYEYYE GQAPQECKTA WVMQEYWMSQ  120
TDLSANSKQK ETSSLCKIFL GDEQFQNHEK TLKIELSNTL NSEPNNLNHQ LVVSDGSTSN  180
NMANGSTSKS EMSEDDKMVE LAVAGKPVDL HLEEMRPEWD VISEGDYLEL QDLLNVPSSS  240
SSSSENSSCL TMSSDEDFDV MDVLCDAEHD INHDRAQRHA ACIRSSVPSR IKKEVAHQGA  300
SESLVSIRRS HSPTTENLKT DSTASISGRV EPELKLASQS EKKCYKLQGA SSSHNNKMVS  360
NGQETAVDGG KKKKKKAVGR MKKIQNKYLC FFPF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1371382KKKKKAVGRMKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444686.10.0PREDICTED: NAC domain-containing protein 13-like
RefseqXP_016900048.10.0PREDICTED: NAC domain-containing protein 13-like
TrEMBLA0A1S3BBN60.0A0A1S3BBN6_CUCME; NAC domain-containing protein 13-like
STRINGXP_008444686.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105882235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-11NAC domain containing protein 28