PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C011064P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ZF-HD

Protein Properties

Length: 239aa MW: 26333.3 Da PI: 7.0777

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C011064P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	106.2	2e-33	47	102	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eClkNhA+ +GghavDGCgEfmp+ geeg+++alkCaAC+CHRnFHR+e+++ MELO3C011064P1 47 SIRYRECLKNHAIGIGGHAVDGCGEFMPA-GEEGSIDALKCAACNCHRNFHRKETDS 102 789***********************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	9.0E-24	35	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.5E-30	48	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.1E-30	49	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.735	50	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	6.58E-20	160	236	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.1E-31	163	237	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	9.3E-27	175	231	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MEFDEENDEE IMDEMPIATH HCDSLTNSAS TRPKPGEGAS TARKTSSIRY RECLKNHAIG 60 IGGHAVDGCG EFMPAGEEGS IDALKCAACN CHRNFHRKET DSDQGHYYYQ QQQQICPYRG 120 PTPHPSAYVY MRGAPVQQRA LALPAAAGGR EEDDTSNPSS SGGGGGGSGS GLLLKKRFRT 180 KFSSEQKEKM LEFAEKVGWT IQKHDEADVE RFCMETGVRR QVLKVWMHNN KHTLGKKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-27	176	233	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein. Putative transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	0.0	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	0.0	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008444884.2	1e-169	PREDICTED: zinc-finger homeodomain protein 2
Swissprot	Q9SB61	6e-73	ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBL	A0A1S3BBE6	1e-168	A0A1S3BBE6_CUCME; zinc-finger homeodomain protein 2
STRING	XP_008444884.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	3e-68	homeobox protein 22

Publications ? help Back to Top
Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA Seed tolerance to deterioration in arabidopsis is affected by virus infection. Plant Physiol. Biochem., 2017. 116: p. 1-8 [PMID:28477474]