PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011164P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 390aa    MW: 43717 Da    PI: 9.2888
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011164P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.57.6e-55611881128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhP+deel+++yL +k+++ +++  ++i++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++
  MELO3C011164P1  61 LPPGFRFHPSDEELITFYLLNKISDANFTG-RAITDVDLNKFEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFNS 154
                     79*************************999.89***************99999****************************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++el+g+kktLvfykgrap+gekt+Wvmheyrl
  MELO3C011164P1 155 nTSELIGMKKTLVFYKGRAPRGEKTNWVMHEYRL 188
                     67788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-6459209IPR003441NAC domain
PROSITE profilePS5100561.09761209IPR003441NAC domain
PfamPF023654.3E-2862188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MQVPSGNNLM TEKEDGKIRS EVKKKNTMTT TESDHHQRHR RHPQDNQTQD QEQQQDKDQT  60
LPPGFRFHPS DEELITFYLL NKISDANFTG RAITDVDLNK FEPWELPGKA KMGEKEWYFF  120
SLRDRKYPTG VRTNRATNTG YWKTTGKDKE IFNSNTSELI GMKKTLVFYK GRAPRGEKTN  180
WVMHEYRLHS KTAFRTAKDE WVVCRVFQKS PGAKKYPPNQ SRAVNPYVNL EIPSSLLPPP  240
IMQLGDPSAT QYGYGRNYIT STELAELNRV LRTGGGGGGS GGGSTHGINL SMQPQFNYPN  300
TGGCFTISGL NLNLGGGISQ PVLRQVPVPP PPVATTMTIG QDIASSVMAS TITPETAYGT  360
EINNNANGPS NRFMNMDHCM DLENYWPNW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-566021516171NO APICAL MERISTEM PROTEIN
1ut4_B3e-566021516171NO APICAL MERISTEM PROTEIN
1ut7_A3e-566021516171NO APICAL MERISTEM PROTEIN
1ut7_B3e-566021516171NO APICAL MERISTEM PROTEIN
4dul_A3e-566021516171NAC domain-containing protein 19
4dul_B3e-566021516171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272283TGGGGGGSGGGS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445052.10.0PREDICTED: NAC domain-containing protein 92
TrEMBLA0A1S3BCI40.0A0A1S3BCI4_CUCME; NAC domain-containing protein 92
STRINGXP_008445052.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50733253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-97NAC domain containing protein 38