PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011296P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 97aa    MW: 10777.1 Da    PI: 9.2112
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011296P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY55.31.3e-176396134
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT--- CS
            WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpv 34
                    ++Dgy+WrKYGqK  k+++ pr+Y++C+s+gCpv
  MELO3C011296P1 63 VKDGYKWRKYGQKITKDNQSPRAYFKCSSPGCPV 96
                    58******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-165596IPR003657WRKY domain
PROSITE profilePS5081117.1445896IPR003657WRKY domain
SuperFamilySSF1182902.75E-155996IPR003657WRKY domain
SMARTSM007742.0E-66396IPR003657WRKY domain
PfamPF031061.9E-126496IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MLKVVSIKNL VSQVDVCSRD HDQNDEGSRS ERADLRVSPP TLETSSTTQA YATTSFKDQA  60
LMVKDGYKWR KYGQKITKDN QSPRAYFKCS SPGCPV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818232e-97LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132572e-97LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016899977.15e-67PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A1S4DVG51e-65A0A1S4DVG5_CUCME; probable WRKY transcription factor 40
STRINGXP_008445263.13e-66(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31800.28e-17WRKY DNA-binding protein 18