PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011458P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-YC
Protein Properties Length: 141aa    MW: 15711 Da    PI: 9.7042
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011458P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC52.98.5e-176911397
           NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt.difdflvdivp 97
                    + +  + e+P  r+kki+k d+d+ ++ +ea  l+s a elf+  l+ +s   a e+kr+t+k   i  av+r   i dfl+d  p
  MELO3C011458P1  6 SGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRMAVKRHrSISDFLLDSLP 91
                    55566779***************************************************************9862689*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.6E-221177IPR009072Histone-fold
SuperFamilySSF471132.1E-181291IPR009072Histone-fold
PfamPF008081.3E-201376IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MEEEESGEAI RPEFPTGRVK KIMKLDKDIG KVNSEALFLV SCATELFLKL LAEKSAEVAA  60
EKKRKTVKLE HIRMAVKRHR SISDFLLDSL PLPSQPSDAS AKDENRIRAV VDKVAPAGTR  120
RIDDFFRRPT KTTSAETNES *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445504.11e-96PREDICTED: dr1-associated corepressor
TrEMBLA0A1S3BDL43e-95A0A1S3BDL4_CUCME; dr1-associated corepressor
STRINGXP_008445504.15e-96(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.14e-30nuclear factor Y, subunit C13