PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C011671P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 243aa    MW: 27466.7 Da    PI: 4.7694
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C011671P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-1883133155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+++AeIrdp     + +r++lg+f+++eeAa  +++a+ +++g
  MELO3C011671P1  83 KKFRGVRRRP-WGKFAAEIRDPI----KrTRIWLGTFDSPEEAAIVYDQAAIRFRG 133
                     59********.**********73....34************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.86E-2983139No hitNo description
PROSITE profilePS5103221.91884141IPR001471AP2/ERF domain
PfamPF008472.2E-1184133IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2684139IPR001471AP2/ERF domain
SMARTSM003801.9E-3484147IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2084140IPR016177DNA-binding domain
PRINTSPR003673.5E-98596IPR001471AP2/ERF domain
PRINTSPR003673.5E-9107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MSSTHSRFKF RERRSVTGIT LPPDSAAPRI LRIFVTDSDA TDTSSSDDDD DDAQLLRLVR  60
RHINEIHFHD STHSKPNELQ PTKKFRGVRR RPWGKFAAEI RDPIKRTRIW LGTFDSPEEA  120
AIVYDQAAIR FRGPDALTNI IKPPQRNLPP EEICDSSMEI AEDGGGMRCS PTSVLRDDYW  180
SATELLGDEM EFMDNYYGAP RIFVEERSIP ETAMFCGGLW EGAVDLDGNF GSCKWDVGTC  240
FE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1983139461ATERF1
3gcc_A2e-1983139461ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818170.0LN681817.1 Cucumis melo genomic scaffold, anchoredscaffold00015.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445792.11e-180PREDICTED: ethylene-responsive transcription factor CRF6-like
SwissprotQ9M3748e-37CRF6_ARATH; Ethylene-responsive transcription factor CRF6
TrEMBLA0A1S3BE801e-179A0A1S3BE80_CUCME; ethylene-responsive transcription factor CRF6-like
STRINGXP_008445792.11e-179(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2445033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61630.11e-35cytokinin response factor 6