PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012028P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 234aa    MW: 26390.8 Da    PI: 6.8665
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012028P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.0001278100123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C k F+++  L  H++ H
  MELO3C012028P1  78 FECQYCLKEFTNSQALGGHQNAH 100
                     89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.17E-576105No hitNo description
Gene3DG3DSA:3.30.160.606.7E-477104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.40678105IPR007087Zinc finger, C2H2
PfamPF139128.4E-678102IPR007087Zinc finger, C2H2
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEKKVKLFGI ELNPSNNSCN KFHDQGDHES VNSSTTTTTT VCFDQRSSSN QQEQEEDDQE  60
EAANIVIINN NNRKATKFEC QYCLKEFTNS QALGGHQNAH KKERLKKKKM QLQARKATLT  120
YYLQSNSTNN HFLYDYDNPN SSSSSPNSSF FISDDYYYNS SQISFNQNDA GLIHFDSSLP  180
FLPQQQRRPF FTFTPPDMSS RQPSTNPVVF HSSSSSSSSP ASCKSLDLQL GLN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102108ERLKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446260.11e-170PREDICTED: zinc finger protein 5
TrEMBLA0A1S3BEM41e-169A0A1S3BEM4_CUCME; zinc finger protein 5
STRINGXP_008446260.11e-170(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.16e-14zinc finger protein 5