PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C012086P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TCP

Protein Properties

Length: 366aa MW: 38962.1 Da PI: 9.4586

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C012086P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.4	4.3e-41	68	239	2	135
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++ + s +ss+s+ s++ MELO3C012086P1 68 PPKRATTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTISAPshlrtsy 162 789******************************************************************99987777777777555556677778 PP TCP 89 ...............kaaksaakskksqksaasalnlakesr...........................akarararertrekmriknk 135 + + +++++nl ++s+ +k r+++ e+++e+ + +++ MELO3C012086P1 163 fsptqfavrtrsdlwD------------RTNNHNHNLVDDSStflnfnsssyvnvfkqdqggidvvetgKKRRSEQSESSSENYMVQTS 239 8776655555554331............2222223333333334444444447777777788888888888888888888887777655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.7E-39	73	200	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.923	74	128	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MIMDGENGIR RPNFPLQLLE KKKEEEEEQQ QQHPCSSSAN NGGTKTTTTI TTTPNSNLQS 60 SSSPKKPPPK RATTKDRHTK VDGRGRRIRM PALCAARVFQ LTRELGHKSD GETIEWLLQQ 120 AEPAVIAATG TGTIPANFTS LNISLRSSGS TISAPSHLRT SYFSPTQFAV RTRSDLWDRT 180 NNHNHNLVDD SSTFLNFNSS SYVNVFKQDQ GGIDVVETGK KRRSEQSESS SENYMVQTST 240 GSIPASQSSQ LPATFWMVTN PTNQGSDQMW TFPSVGNSSM LRGTGGGGGG GGGFHFMNLP 300 PPMALLPSGQ QLGTGIGGGG GPATDSHLGM LAALSAYRTT MPGLSVSESP TRGVGGVTSN 360 NPDQS*

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MIMDGENGIR RPNFPLQLLE KKKEEEEEQQ QQHPCSSSAN NGGTKTTTTI TTTPNSNLQS  60
SSSPKKPPPK RATTKDRHTK VDGRGRRIRM PALCAARVFQ LTRELGHKSD GETIEWLLQQ  120
AEPAVIAATG TGTIPANFTS LNISLRSSGS TISAPSHLRT SYFSPTQFAV RTRSDLWDRT  180
NNHNHNLVDD SSTFLNFNSS SYVNVFKQDQ GGIDVVETGK KRRSEQSESS SENYMVQTST  240
GSIPASQSSQ LPATFWMVTN PTNQGSDQMW TFPSVGNSSM LRGTGGGGGG GGGFHFMNLP  300
PPMALLPSGQ QLGTGIGGGG GPATDSHLGM LAALSAYRTT MPGLSVSESP TRGVGGVTSN  360
NPDQS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008446337.1	0.0	PREDICTED: transcription factor TCP15
TrEMBL	A0A1S3BFM6	0.0	A0A1S3BFM6_CUCME; transcription factor TCP15
STRING	XP_008446337.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2120	32	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-48	TCP family protein