PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012177P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 546aa    MW: 58644.6 Da    PI: 6.6972
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012177P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46e-09378426355
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L+el+P +    sk   Ka +L + ++Y++sLq
  MELO3C012177P1 378 NSHSLAERVRREKISERMKFLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 426
                     58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.50E-11373430No hitNo description
SuperFamilySSF474591.03E-16373443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459375425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16376442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-6378426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-10381431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MDIGDRDKFR LESSIEGTVN CSNSMSSDWQ FGETTLTSMP TGLVLPGNVD VVRNQDMVGC  60
SSSTASVVES FSSTIWEQSA HSQNLGISNI QGHNNSNTSN IIGISKASGC PVSSSSDIDR  120
TLDISWNLSH NILKGGVYLP NIPGMLPPSL SQLPADSSFI ERAARLSCFS GGNFGDIVGH  180
FNIPDPVGVF SRGMGVIPDR WDEIPRNGLG LASVTGGQSQ RNVINSETSK PVCLTNEHGA  240
TETDSPKNGS PLKLDDRGKL AVDGSANESD EAECSGGDGL GEPCTLEATG KELSAKGLGT  300
RKRKRSGQKT ELDQANGPLQ QTTVSPKDDA ETHRKRDQNP NSTANKGTGK HGKQASQPSD  360
PPKEEYIHVR ARRGQATNSH SLAERVRREK ISERMKFLQE LVPGCSKVTG KAVMLDEIIN  420
YVQSLQRQVE FLSMKLATVN PRLDINIDGV VTKDILQSRV GPLSTLGFSS HMPVACPPPN  480
ISHHELIPSN FPAIGSSEML RSTMNSHMTQ RSGGFKNPSQ IKNVWDGELQ NIVQMSFGMP  540
TPPNC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446486.10.0PREDICTED: transcription factor bHLH49 isoform X1
TrEMBLA0A1S3BEP00.0A0A1S3BEP0_CUCME; transcription factor bHLH49 isoform X1
STRINGXP_008446486.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-106bHLH family protein