PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012250P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 218aa    MW: 23976.7 Da    PI: 8.1606
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012250P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26089.44.7e-284105197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C++lr++C++dC+++p++      ++q++++ +++k++G++ + +l++a+ ++ r+++++sl+yeA+ r+ +PvyG+vg++ ++ ++ +q+
  MELO3C012250P1   4 SCNGCRILRKGCSDDCIIRPCLqwipsSDSQANATIFLAKFYGRAGLFNLITAAAHHLRPAIFKSLLYEACGRMVNPVYGSVGLLCSGDWERCQA 98 
                     6*********************99954446789************************************************************** PP

          DUF260  91 kaelall 97 
                     +++++l 
  MELO3C012250P1  99 AVDAVLN 105
                     9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.3023109IPR004883Lateral organ boundaries, LOB
PfamPF031958.6E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MKMSCNGCRI LRKGCSDDCI IRPCLQWIPS SDSQANATIF LAKFYGRAGL FNLITAAAHH  60
LRPAIFKSLL YEACGRMVNP VYGSVGLLCS GDWERCQAAV DAVLNGSMNV EPDTPPSNNG  120
NFSLKCCDIR HVCNEPNLAA SGDLLKVKGR SRFKKPDHRT KSKPGPDHEL GIGSSSDESG  180
RDLRSGSRFE KXXXXXXXGL WRMDMWLCDE VEGYNIL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135401.11e-133PREDICTED: LOB domain-containing protein 40-like
SwissprotQ9CA301e-59LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A0A0KUI01e-130A0A0A0KUI0_CUCSA; Uncharacterized protein
STRINGXP_008447012.11e-136(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.15e-62LOB domain-containing protein 42