PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012365P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 216aa    MW: 25332.2 Da    PI: 6.0033
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012365P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.53.5e-133493987
        trihelix 39 rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                    +e g++rs k+Ckek++nl k+ykk+keg+ +r+  + +++++f+qlea
  MELO3C012365P1  3 EEYGYKRSGKKCKEKFDNLYKYYKKTKEGKTGRH--DGKHYRFFRQLEA 49
                    578****************************985..5557*******85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-9350No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MAEEYGYKRS GKKCKEKFDN LYKYYKKTKE GKTGRHDGKH YRFFRQLEAI YGQSNDQISS  60
PIIESNFYRN SVARSETPPP EKYPSTGGEN HQEAGGGMSL SFTISSDFET SSSGNYHDDD  120
LNNNNKGESW REEVEKMVDM KMSRLMEVQE NWMEKIMSSV EDGEKERIMK EEEWRKQEMA  180
RFDHEMSEFC ARERAWLHAR ELAFMEIVKK FADKG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1715KRSGKKCKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446778.11e-152PREDICTED: trihelix transcription factor PTL-like
TrEMBLA0A1S3BFD91e-150A0A1S3BFD9_CUCME; trihelix transcription factor PTL-like
STRINGXP_008446778.11e-151(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-43Trihelix family protein