PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012390P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 453aa    MW: 49667.7 Da    PI: 4.0486
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012390P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM31.26.2e-10127102128
             NAM 102 lkktLvfykgrapkgektdWvmheyrl 128
                     +kktLv++ grap+g +t+Wvmhey+l
  MELO3C012390P1   1 MKKTLVYHIGRAPRGARTNWVMHEYKL 27 
                     8************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100520.623150IPR003441NAC domain
SuperFamilySSF1019414.05E-15150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009819Biological Processdrought recovery
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MKKTLVYHIG RAPRGARTNW VMHEYKLTDE EMGKIATVQD AFVLCRIFQK SGTGPKNGEQ  60
YGAPFIEEEW EENEELAVVP GDDQAANELL GVGGVCIEGD DFSENVEEGI LSESAPPPPF  120
NFYYGETSNS IEQSDNYIED DQKPAVGICE TSELPDGQKF FVLPDECGLH DRLVKHEYLA  180
ESSNDAGANA ADEVDAGDVD GRYVLNEPFY STSDNLSFSD ELLLEPNELS NPTESDPADF  240
DVLEEYLTFF DADGDNADMS FDPSEILGSG SPIPDQTEVV GGATEHASTS KQTADLHHDN  300
EASSSSMQRP EDPKSEPDIK YPFLKHTSHM LGSIPAPFAS QFTSKDAAIH LNSAPQASSS  360
VRVTAGMLII RNIALNGYEV NNMYGKNSDL NVIYLYGIVE GNIDSSQLLP NAGVNSSKSE  420
PLISRYFLYF FILFWVLILS ASFKVARCIH SR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00343DAPTransfer from AT3G10500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446811.10.0PREDICTED: NAC domain-containing protein 53-like
TrEMBLA0A1S3BGS50.0A0A1S3BGS5_CUCME; NAC domain-containing protein 53-like
STRINGXP_008446811.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.11e-81NAC domain containing protein 53