PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012480P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 237aa    MW: 27049.1 Da    PI: 8.2685
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012480P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.5e-064064123
                    EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
                    ++Cp   Cgk+F+  s L++H  +H
  MELO3C012480P2 40 FVCPedGCGKVFRYASRLQKHEGSH 64
                    89*******************8666 PP
2zf-C2H210.70.00177497323
                    ET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  3 Cp..dCgksFsrksnLkrHirt.H 23
                    C+   C k+F++k  L+ H++t H
  MELO3C012480P2 74 CTepGCLKTFTNKQCLRAHMQTcH 97
                    55669*****************66 PP
3zf-C2H2218.5e-07133156323
                     ET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                     C+   C+k+Fs+ snL++H ++ H
  MELO3C012480P2 133 CTyeGCSKVFSTASNLQQHTKVvH 156
                     88889***************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.697232IPR007087Zinc finger, C2H2
SMARTSM003555.9227IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280427IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-83564IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.53E-53765No hitNo description
PROSITE profilePS5015710.7624069IPR007087Zinc finger, C2H2
SMARTSM003556.8E-44064IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804264IPR007087Zinc finger, C2H2
SMARTSM003550.557297IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.4E-47495IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807497IPR007087Zinc finger, C2H2
SMARTSM003555.6100122IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.42E-9112166No hitNo description
PROSITE profilePS5015713.588131161IPR007087Zinc finger, C2H2
SMARTSM003550.0012131156IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.0E-7133158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280133156IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-5159184IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035511162187IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280164188IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MFKCPIESCC REFAYLSCVT RHLKECHEGE APPEECQKQF VCPEDGCGKV FRYASRLQKH  60
EGSHVKLDSI EACCTEPGCL KTFTNKQCLR AHMQTCHQYV KCEICGEKKL RKNLKQHLRQ  120
KHESEGPLEA IPCTYEGCSK VFSTASNLQQ HTKVVHLGQK PFACCFPGCG MRFGYKHVRD  180
NHEKSGHHVY TNGDFEAADE QFRSKPRGGR KRICPTVEML IRKRVTPPSD LDFMME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gli_A1e-11421734140PROTEIN (FIVE-FINGER GLI)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2841201e-142EU284120.1 Cucumis sativus C2H2 zinc finger protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008446968.11e-175PREDICTED: transcription factor IIIA
SwissprotQ84MZ49e-85TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A1S3BH741e-173A0A1S3BH74_CUCME; transcription factor IIIA
STRINGXP_008446968.11e-174(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.17e-88transcription factor IIIA