PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012498P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 97aa    MW: 11201.7 Da    PI: 9.4681
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012498P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.7e-081457344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+   +l+ +a +++ ++   +W  Ia  +g g+++ +++ ++
   MELO3C012498P1 14 TWTPKQNKLFEKALALYDKDtpeRWQNIATAVG-GKSADEVQRHY 57
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.365761IPR017877Myb-like domain
SMARTSM007172.1E-71163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-51367IPR009057Homeodomain-like
CDDcd001674.76E-61461No hitNo description
PfamPF002496.2E-71457IPR001005SANT/Myb domain
SuperFamilySSF466892.57E-121568IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MASSSLKQQR PETTWTPKQN KLFEKALALY DKDTPERWQN IATAVGGKSA DEVQRHYEIL  60
LEDLRQIESG RVPIPNYRGT SNRDEELRLL KYLKLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-29396293RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818001e-146LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132551e-146LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008447023.11e-65PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1738e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1S3BHB02e-64A0A1S3BHB0_CUCME; protein RADIALIS-like 3
STRINGXP_008447023.14e-65(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-35RAD-like 6