PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012508P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 82aa    MW: 9262.36 Da    PI: 7.7801
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012508P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.39.6e-101158348
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                      WT+ E + + +a + + ++   +W  +a+ +g g+t++++k ++q +l
   MELO3C012508P1 11 QWTAIENKAFEKALAIYDKDtpeRWLNVAKAIG-GKTEEDVKRHYQLLL 58
                     6********************************.************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.852762IPR017884SANT domain
SMARTSM007171.2E-8860IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-131066IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-51064IPR009057Homeodomain-like
PfamPF002491.9E-71157IPR001005SANT/Myb domain
CDDcd001675.61E-81258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MASMSAHGST QWTAIENKAF EKALAIYDKD TPERWLNVAK AIGGKTEEDV KRHYQLLLED  60
VNHIENGQIP FPYRNSTRSS R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-29176176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818001e-135LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132551e-135LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008447026.15e-56PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB83e-30RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1S3BGF01e-54A0A1S3BGF0_CUCME; protein RADIALIS-like 1
STRINGXP_008447026.12e-55(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-32RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]