PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012579P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 527aa    MW: 57667.1 Da    PI: 7.9693
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012579P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.6e-11162186226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++ t tCk+Gd+CkF H+
  MELO3C012579P1 162 GEKDCAHYMLTRTCKFGDSCKFDHP 186
                     7889********************8 PP
2zf-CCCH34.14.5e-11216239427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     + C++f++t  Ck+G+rCkF+H++
  MELO3C012579P1 216 PDCPYFLKTQRCKFGSRCKFNHPK 239
                     78********************96 PP
3zf-CCCH34.14.5e-11261285327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++lC f+ +tG Ck+G +CkF+H++
  MELO3C012579P1 261 EPLCAFYIKTGNCKFGINCKFHHPK 285
                     79*********************96 PP
4zf-CCCH36.96.3e-12337362126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ++++ C+f+++tG CkyG +C+++H+
  MELO3C012579P1 337 PGEVDCPFYLKTGSCKYGTTCRYNHP 362
                     57899********************9 PP
5zf-CCCH40.93.3e-13422445326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     + +C+++++tG Ck+G+rCkF+H+
  MELO3C012579P1 422 QIECDYYMKTGDCKFGERCKFHHP 445
                     568********************8 PP
6zf-CCCH39.21.2e-12474496527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C+++++tGtCkyG +CkF H+p
  MELO3C012579P1 474 ICPYYLKTGTCKYGTTCKFDHPP 496
                     6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.507160188IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011160187IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8162186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-5162187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-4166185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.587212240IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5212239IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8216239IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5217241IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4218238IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422258286IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5258285IPR000571Zinc finger, CCCH-type
PfamPF006429.0E-8261285IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6261285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5263284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234336364IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6336363IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-9338362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5340363IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4342361IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.047419447IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6419446IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6422447IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-10423445IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5425445IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.741469497IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6469496IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6472496IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-10474496IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-6474494IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MANQLHSYNS VYGAASASAS ATAVPSLPTT YSSSRSLSDI VSGRYLLPDS LSSGVSIKQS  60
VTDRGTSMYS TQKEGPLSSA DIVPRTSHLV TQFSWPGSHV AAALDSVISG IKRSSDVLYD  120
QTVLGSYNTL GQSEAWYTSN SLAKRPRFES TSNLPVYPQR PGEKDCAHYM LTRTCKFGDS  180
CKFDHPIWVP EGGIPDWKEV PQIANSEDLP ERLGDPDCPY FLKTQRCKFG SRCKFNHPKD  240
RSDSVGAEKS DASKLPERPS EPLCAFYIKT GNCKFGINCK FHHPKDIQIL SGEENGNSEQ  300
TLMAKTEERA GDVKLKPPPV SLSPALMHNS KGLPIRPGEV DCPFYLKTGS CKYGTTCRYN  360
HPDRNAINPS TPAMVHPAMV STANMNTGFV NPSNAIYQAV DPRLIQPLLG SGSSIYPQRP  420
GQIECDYYMK TGDCKFGERC KFHHPIDRSA PKQGALHNVK LTLAGLPRRE EAIICPYYLK  480
TGTCKYGTTC KFDHPPPGEV MTMAAIQSAP GKEGEDRIDE SVDERL*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818000.0LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008447068.10.0PREDICTED: zinc finger CCCH domain-containing protein 37
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A1S3BGI60.0A0A1S3BGI6_CUCME; zinc finger CCCH domain-containing protein 37
STRINGXP_008447068.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-176floral homeotic protein (HUA1)