PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012729P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 495aa    MW: 55121.1 Da    PI: 6.2968
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012729P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS308.41.7e-941274841374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lL+ec  a+s ++l +a+++L +l ++asp+g ++ +R+++yf+ A+a+r+ +s  ++++ l          ++  ++++lf++vsP++kf+
  MELO3C012729P1 127 LISLLFECGVAISVDNLMEAHRMLLELTQMASPYGqSSAERVVTYFAAAMASRVINSILGICSPLLNY-------KSINNSFQLFYNVSPFIKFA 214
                     5799*******************************889******************777777655333.......33456899************ PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     hl+ Nq+Ile++++++ vHiiD+di+qGlQWp+LlqaL+ R   + + ++RiT+vg       e l  tg++L+++A++lg++fe+n+ +a ++ 
  MELO3C012729P1 215 HLASNQTILESLSHCDIVHIIDLDIMQGLQWPPLLQALSMRMdnGRSRHVRITAVGT----TMELLLDTGKQLSDVARHLGLSFEYNP-IAGKVG 304
                     *****************************************9756678*********....99*************************.799*** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     ++++++L+++++Ea++ n+v   h l+d  ++  +    ++ l+++++Pkv+ +veq++ + ++ Fl+rf+++l+yy a+fdsl a l +++++r
  MELO3C012729P1 305 KIDVSMLKLRRNEAVVMNWVR--HCLYDAIGADWK----TIGLIQQVRPKVFAFVEQDMCY-GGAFLDRFVSSLHYYCAIFDSLGACLRSDDSNR 392
                     ********************9..777755555555....********************99.678****************************** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                     + vE+ +l rei n++a  g++r   +e++++Wr+ l+++ + +vp+s++ ++qa l+l++++ ++g+++ +   g+l l Wkd +L+++S+W+
  MELO3C012729P1 393 NQVEHSILYREINNILAIGGSSR-SGEEKFREWRSELRNS-LIEVPMSTNSMAQAWLMLNMHSnNQGFSLVQGeGGTLKLRWKDTSLYTASSWT 484
                     *********************95.56788********987.789*******************9****98866155566**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.914101462IPR005202Transcription factor GRAS
PfamPF035145.8E-92127484IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MSMSPIKTPP MLFLHQLPSI YFLLLSSFLP LCLSSSMKLS RPEVVNGCLL QPPHPHEPWD  60
YVLPSSSTSI TPILHNQPFN LQCNDYAYSV DHVSDLQESS TDDTVSGDEV YVGNGRSKDV  120
DDHGLTLISL LFECGVAISV DNLMEAHRML LELTQMASPY GQSSAERVVT YFAAAMASRV  180
INSILGICSP LLNYKSINNS FQLFYNVSPF IKFAHLASNQ TILESLSHCD IVHIIDLDIM  240
QGLQWPPLLQ ALSMRMDNGR SRHVRITAVG TTMELLLDTG KQLSDVARHL GLSFEYNPIA  300
GKVGKIDVSM LKLRRNEAVV MNWVRHCLYD AIGADWKTIG LIQQVRPKVF AFVEQDMCYG  360
GAFLDRFVSS LHYYCAIFDS LGACLRSDDS NRNQVEHSIL YREINNILAI GGSSRSGEEK  420
FREWRSELRN SLIEVPMSTN SMAQAWLMLN MHSNNQGFSL VQGEGGTLKL RWKDTSLYTA  480
SSWTCSNGGG VALN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1141164848379Protein SCARECROW
5b3h_A1e-1141164847378Protein SCARECROW
5b3h_D1e-1141164847378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818000.0LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008447231.10.0PREDICTED: protein SCARECROW-like
TrEMBLA0A1S3BGY80.0A0A1S3BGY8_CUCME; protein SCARECROW-like
STRINGXP_008447231.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117873138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-113GRAS family protein