PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012908P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 244aa    MW: 27013.9 Da    PI: 6.4981
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012908P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.61e-3871071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+apyf++eq + +fa++hk+FGasnv+kll++lp +er +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+l
  MELO3C012908P1   7 PCGACKFLRRKCVRGCVFAPYFCHEQgATHFAAIHKVFGASNVSKLLARLPITERCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVSLQAQL 101
                     7*************************89******************************************************************* PP

          DUF260  95 allkee 100
                     a+lke+
  MELO3C012908P1 102 ASLKEQ 107
                     *99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.0926108IPR004883Lateral organ boundaries, LOB
PfamPF031957.5E-377105IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MTGSGSPCGA CKFLRRKCVR GCVFAPYFCH EQGATHFAAI HKVFGASNVS KLLARLPITE  60
RCEAAVTISY EAQARLQDPI YGCVSHIFAL QQQVVSLQAQ LASLKEQAAE SIMNASSNVG  120
GVNEKINSRK VPSHPQDLHS WFQSEQPNVT LEFNPNPTPN NNCASNTNYY DENYRIMVNS  180
QSNGNYENHH IAKMEESGSY GSFEETSGYS MYTLDQLHSN VQQWSFSDSA DDLQSVAFGN  240
RHW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3531227122LOB family transfactor Ramosa2.1
5ly0_B2e-3531227122LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818270.0LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008447445.10.0PREDICTED: LOB domain-containing protein 29
TrEMBLA0A1S3BHF90.0A0A1S3BHF9_CUCME; LOB domain-containing protein 29
STRINGXP_008447445.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35713366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.14e-58lateral organ boundaries-domain 29