PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C012994P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 202aa    MW: 22871.3 Da    PI: 4.5053
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C012994P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.4e-193382255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr+++ +g+Wv+eIr p++   + r++lg+f tae+Aa+a++ a+++++g
  MELO3C012994P1 33 IYRGVRRRS-WGKWVSEIRQPRK---KSRIWLGTFTTAEMAARAHDVAALSIKG 82
                    69****887.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.2E-133282IPR001471AP2/ERF domain
CDDcd000185.00E-293292No hitNo description
SuperFamilySSF541714.45E-203393IPR016177DNA-binding domain
SMARTSM003803.9E-343398IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-313393IPR001471AP2/ERF domain
PROSITE profilePS5103223.1963392IPR001471AP2/ERF domain
PRINTSPR003674.5E-113445IPR001471AP2/ERF domain
PRINTSPR003674.5E-115672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAESNNWNSE SESREMKRGK QRDQEQRDQK HPIYRGVRRR SWGKWVSEIR QPRKKSRIWL  60
GTFTTAEMAA RAHDVAALSI KGDSARAILN FPQLAGLLPR PVSLMPRDIQ EAAAKAAAMV  120
DFDSETVSFS NGEEGSDELG EIVELPNIEE DIRAESWNEF EFIDSVDWWG NPPFTAAEMD  180
FCAVFSDQST APVTFDRGDW E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1831931273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818270.0LN681827.1 Cucumis melo genomic scaffold, anchoredscaffold00018.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008447541.11e-146PREDICTED: ethylene-responsive transcription factor TINY
SwissprotQ391278e-51TINY_ARATH; Ethylene-responsive transcription factor TINY
SwissprotQ9LYD39e-51DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A1S3BHN51e-145A0A1S3BHN5_CUCME; ethylene-responsive transcription factor TINY
STRINGXP_008447541.11e-146(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.12e-49ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]