PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013578P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family G2-like
Protein Properties Length: 119aa    MW: 13318.8 Da    PI: 9.6884
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013578P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1031.8e-3252105255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+
  MELO3C013578P1  52 PRLRWTPDLHLAFVNAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 105
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.29748108IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-3048106IPR009057Homeodomain-like
SuperFamilySSF466895.02E-1550106IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-2452107IPR006447Myb domain, plants
PfamPF002496.8E-1053104IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MDEGFGEGNS NNSNTSSNNG SMEEVEKEEE FDEQRSRSGH GSVRKYSRSK MPRLRWTPDL  60
HLAFVNAVER LGGQERATPK LVLQLMNVRG LSIAHVKSHL QMYRSKKLDE SGQGRVSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-2153107458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-2153107458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-2153107357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-2153107357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-2153107357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-2153107357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-2153107458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-2153107458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-2153107458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-2153107458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-2153107458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-2153107458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819181e-123LN681918.1 Cucumis melo genomic scaffold, anchoredscaffold00020.
GenBankLN7132651e-123LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448244.15e-75PREDICTED: uncharacterized protein LOC103490495 isoform X1
RefseqXP_008448245.15e-75PREDICTED: uncharacterized protein LOC103490495 isoform X1
RefseqXP_008448246.11e-77PREDICTED: probable transcription factor KAN2 isoform X2
SwissprotQ700D95e-28MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A1S3BJ913e-76A0A1S3BJ91_CUCME; probable transcription factor KAN2 isoform X2
TrEMBLA0A1S3BK411e-73A0A1S3BK41_CUCME; uncharacterized protein LOC103490495 isoform X1
STRINGXP_008448244.12e-74(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30123270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-38G2-like family protein