PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013679P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 148aa    MW: 15876 Da    PI: 7.5341
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013679P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000571739123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ Fs+   L  H  +H
  MELO3C013679P1 17 FVCKTCNREFSSFQALGGHRASH 39
                    89**********99999998887 PP
2zf-C2H211.70.000826385123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C++Cg  F+    L  H+r+H
  MELO3C013679P1 63 HECSICGVEFPVGQALGGHMRRH 85
                    78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.71E-81585No hitNo description
PfamPF139128.9E-131641IPR007087Zinc finger, C2H2
SMARTSM003550.241739IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9721744IPR007087Zinc finger, C2H2
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
PfamPF139123.0E-116286IPR007087Zinc finger, C2H2
SMARTSM003550.146385IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6166390IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MAHSSIVPNF HHPPRVFVCK TCNREFSSFQ ALGGHRASHR KPKLSISADG VFNSSNQVKT  60
KVHECSICGV EFPVGQALGG HMRRHRNSSP PPPVVNDHPQ MGQPVVSDES DCDCGVGGGV  120
DLDLNLTPLE NDLVRLQLMA PPVGCFT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819180.0LN681918.1 Cucumis melo genomic scaffold, anchoredscaffold00020.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448374.11e-105PREDICTED: zinc finger protein ZAT11
SwissprotQ9SLD43e-32ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A1S3BJI51e-103A0A1S3BJI5_CUCME; zinc finger protein ZAT11
STRINGXP_008448374.11e-104(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-30C2H2 family protein