PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013717P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 243aa    MW: 25964.5 Da    PI: 5.1839
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013717P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.72.3e-06139160223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     +C  C+k+F+++  L  H+r+H
  MELO3C013717P1 139 RCATCNKVFKSWKALFGHLRSH 160
                     6********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.642138160IPR007087Zinc finger, C2H2
PfamPF139128.6E-8139162IPR007087Zinc finger, C2H2
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEKNTNTNAN TNININIDAV SETSPDQRHG GERSPMAASP LPPARNIDDI NNPPTVVIEP  60
SSSTLVAAPE SATPGDVRRR QSVDAMFDVG TSSHEHVGGS SDAEAGKKRG RGDGGEQQQQ  120
VKAAKKKGEL TEVPKGEPRC ATCNKVFKSW KALFGHLRSH PERTYRGALP PPTAAELDIR  180
RCQQQLASTL LTVAQQVAAT RRGLDIDLNQ PSTADDGDSP DNTRDAGFDL NLEPPPESDD  240
EK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105111GKKRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449156.11e-179PREDICTED: uncharacterized protein LOC103491103
TrEMBLA0A1S3BLF21e-178A0A1S3BLF2_CUCME; uncharacterized protein LOC103491103
STRINGXP_008449156.11e-178(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102022128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35700.15e-17C2H2 family protein