PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013858P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 266aa    MW: 29827.3 Da    PI: 7.5943
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013858P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-05108130123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y C+ Cg+ F++   L  H+++H
  MELO3C013858P1 108 YNCTFCGREFRSAQALGGHMNVH 130
                     89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.83E-6105135No hitNo description
Gene3DG3DSA:3.30.160.604.7E-4107133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0036108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.759108135IPR007087Zinc finger, C2H2
PfamPF139127.4E-7108131IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MFLWLALCLH SSSNYAKSPF PSLLTYYSSI SHPFRTLTSY LKCYLPAKLN SSQLRISFQL  60
FSLDSYWSYR MLNPNQAHQD EDGDSWEIRA FAEDTGNIMG TTWPPRFYNC TFCGREFRSA  120
QALGGHMNVH RRDRVRFHHQ TQLNSIQHVS PSFTIPTPKL IYNNEIDEVC FLYQLPNDNI  180
DFLNSITSSG ACLQSPSTAQ HPSSSRTASS LQSLKSPGEL RGGTSSSSSH CSHMSSKGDD  240
SLISINDGNE KIDLELRLGH RASPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A7e-11103130229superman protein
2l1o_A7e-11103130229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448698.10.0PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A1S3BKB50.0A0A1S3BKB5_CUCME; transcriptional regulator SUPERMAN-like
STRINGXP_008448698.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.19e-29C2H2 family protein