PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C013970P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family YABBY
Protein Properties Length: 185aa    MW: 20476.3 Da    PI: 8.6198
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C013970P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2139.6e-66151815169
           YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesastsvs 97 
                       s+q+Cyv+Cn C+t+lavsvPstslfk vtvrCG+C++ll v++     ll++ s+++  ++ +     ++++  e+++  + +   ++t+  
  MELO3C013970P1  15 PPSDQLCYVHCNICDTVLAVSVPSTSLFKRVTVRCGYCANLLPVSMCGG-MLLPSPSQFHGFTHSTtfFSPNTHNFLEEISNPNPNFLMNQTEGI 108
                     679****************************************987665.566777764433333323222222222222222222223333334 PP

           YABBY  98 seklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                       ++ +   ++vpr+pp ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+i fg
  MELO3C013970P1 109 DLTMATRVPNDVPRQPPtINRPPEKRQRVPSAYNRFIKDEIQRIKAANPDISHREAFSAAAKNWAHFPHIRFG 181
                     44568888999**999989****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.4E-6516181IPR006780YABBY protein
SuperFamilySSF470958.77E-9120175IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.108.6E-5130176IPR009071High mobility group box domain
CDDcd013901.30E-5136172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSSSSLPTTF SQLPPPSDQL CYVHCNICDT VLAVSVPSTS LFKRVTVRCG YCANLLPVSM  60
CGGMLLPSPS QFHGFTHSTT FFSPNTHNFL EEISNPNPNF LMNQTEGIDL TMATRVPNDV  120
PRQPPTINRP PEKRQRVPSA YNRFIKDEIQ RIKAANPDIS HREAFSAAAK NWAHFPHIRF  180
GSSS*
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818603e-91LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132603e-91LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448889.11e-135PREDICTED: protein YABBY 4-like
RefseqXP_016900570.11e-135PREDICTED: protein YABBY 4-like
SwissprotA2X7Q31e-59YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-59YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A1S4DXY31e-134A0A1S4DXY3_CUCME; protein YABBY 4-like
STRINGXP_008448889.11e-134(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20403490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.17e-57YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]