PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C014029P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GRAS

Protein Properties

Length: 105aa MW: 11950.1 Da PI: 7.8469

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C014029P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	105.5	7.5e-33	1	101	111	213
GRAS 111 rvHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vakrledleleeLrvkpgEal 202 ++H++Dfdi++G+QWp+L+qaLa+R ++p+lRiT+ g + + l++tg+rL+kfA++lg++f+f++l + ++ + + + +L + p+Eal MELO3C014029P1 1 MIHVLDFDIMHGVQWPPLMQALADR-FPSPMLRITATGL----DLNFLHKTGDRLSKFAQSLGLRFQFHPLlllHDRDHHRVIPAALTLFPDEAL 90 79********************9.788******....9**********************988555689999********* PP GRAS 203 aVnlvlqlhrl 213 aVn+vl lhr MELO3C014029P1 91 AVNCVLYLHRY 101 *******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	22.614	1	104	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.5E-30	1	101	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MIHVLDFDIM HGVQWPPLMQ ALADRFPSPM LRITATGLDL NFLHKTGDRL SKFAQSLGLR 60 FQFHPLLLLH DRDHHRVIPA ALTLFPDEAL AVNCVLYLHR YGIL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681860	1e-176	LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBank	LN713260	1e-176	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008448967.1	1e-65	PREDICTED: scarecrow-like protein 18
Swissprot	Q9ZWC5	2e-22	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A1S3BLL3	3e-64	A0A1S3BLL3_CUCME; scarecrow-like protein 18
STRING	XP_008448967.1	4e-65	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12926	21	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	6e-22	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]