PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014056P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GRAS
Protein Properties Length: 662aa    MW: 73470.1 Da    PI: 5.1042
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014056P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS397.41.5e-1212646441373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     l++lL++c+ea+ s++  l+++l+ +l ++asp+g +p++Rl+ay+teALa r++r +++++++ +p+e + + ++++ +al+l++evsPi+kf 
  MELO3C014056P1 264 LISLLMACVEAIGSKNIGLITHLIDKLGTQASPRGsSPITRLIAYYTEALALRVSRVWPQVFHITTPREYD-RMEDDTGTALRLLNEVSPIPKFI 357
                     5799*******************************99**************************99999997.5678888999************* PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+taN++ l+a+eg+++vHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fAe+l++pfef++ v++rled+
  MELO3C014056P1 358 HFTANEMFLRAFEGKDKVHIIDFDIKQGLQWPSLFQSLASRANPPSHVRITGIGE----SKQELNETGDRLAGFAEALRLPFEFHA-VVDRLEDV 447
                     *******************************************************....***************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     +l++L+vk++E++ Vn++lqlh++l +    +   +++L l++s++P +vv++eqea+hn++++ +r++ +l+yy+a+fdsl+++lp+es++r k
  MELO3C014056P1 448 RLWMLHVKEQESVGVNCILQLHKTLYDGNGGA--LRDFLGLIRSTNPSIVVMAEQEAEHNEPRLETRVAATLKYYAAIFDSLDTSLPPESSARLK 540
                     *************************6554444..589********************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplse.kaakqaklllrkvk..sdgyrve....ee........sgslvlgWk 363
                     +E++ +grei+n++aceg+er erh  ++kW++ +e+  G++ +++ + ++  q + ll++++   +g++v     ee         ++++l+W+
  MELO3C014056P1 541 IEEM-FGREIRNMIACEGRERYERHVGFKKWKKDMEQqGGLQCIRIHDdRELLQTQFLLKMYSsaAHGFNVTkieeEEeeeeeegtAQAICLTWE 634
                     ****.******************************98578****997615779*********98778999987765115667777777889**** PP

            GRAS 364 drpLvsvSaW 373
                     d+pL++vSaW
  MELO3C014056P1 635 DQPLYTVSAW 644
                     ********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.71238609IPR005202Transcription factor GRAS
PfamPF035145.3E-119264644IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRNRLRSE AQPPFPACHL QLPTSMSTQR LDLPCSFSRS KDASASARSP  60
SIRPVALSVE KQNIRLPPLS ATNQQIKQEF WKGKGKNLKR IAEQVGFDDD DDSSISSAKR  120
KRECSRDDTA ADGLILSQFG GGGGSFWFHQ PDVDEGFCFL PGSEVISSPS PFLSEIADLG  180
EGNDGEESSH VKAQEASGSG SGSSSSSESE RFALRRRVTT ENVSAATTTT VQEIGNGSSR  240
NPSYHHHQAS DLENEREEEE GFELISLLMA CVEAIGSKNI GLITHLIDKL GTQASPRGSS  300
PITRLIAYYT EALALRVSRV WPQVFHITTP REYDRMEDDT GTALRLLNEV SPIPKFIHFT  360
ANEMFLRAFE GKDKVHIIDF DIKQGLQWPS LFQSLASRAN PPSHVRITGI GESKQELNET  420
GDRLAGFAEA LRLPFEFHAV VDRLEDVRLW MLHVKEQESV GVNCILQLHK TLYDGNGGAL  480
RDFLGLIRST NPSIVVMAEQ EAEHNEPRLE TRVAATLKYY AAIFDSLDTS LPPESSARLK  540
IEEMFGREIR NMIACEGRER YERHVGFKKW KKDMEQQGGL QCIRIHDDRE LLQTQFLLKM  600
YSSAAHGFNV TKIEEEEEEE EEEGTAQAIC LTWEDQPLYT VSAWSPAEVS GSSSSFNHPT  660
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-612516466380Protein SCARECROW
5b3h_A9e-612516465379Protein SCARECROW
5b3h_D9e-612516465379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448980.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A1S3BLX10.0A0A1S3BLX1_CUCME; scarecrow-like protein 28
STRINGXP_008448980.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein