PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014059P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 202aa    MW: 22623.6 Da    PI: 9.4377
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014059P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.4e-051738223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    kC+ C++ F++   L  H+r+H
  MELO3C014059P1 17 KCEVCNREFNSIKALYGHMRSH 38
                    8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.0E-4838IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801638IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3281638IPR007087Zinc finger, C2H2
SMARTSM003550.00771638IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.61E-81638No hitNo description
PfamPF139123.7E-81740IPR007087Zinc finger, C2H2
SuperFamilySSF576673.61E-8127154No hitNo description
PfamPF139124.4E-7131156IPR007087Zinc finger, C2H2
PROSITE profilePS501579.536132159IPR007087Zinc finger, C2H2
SMARTSM003555.3132154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MKFYLEGHEE EKSTKCKCEV CNREFNSIKA LYGHMRSHPD RSWKGIQPPI SIASSSSSSS  60
SSPLPSWSLT AKRGCKGISC VTAAPSSSSS RSSSSETEAK LESLYSNPDV VEDQRKVKKM  120
KKINEIELKK VYKCNSCEKE YLSHQALGGH KSRHRKSKIL LRTSSNLTTR THQERKILNF  180
DLNELPTMEH DDNEEVKASI G*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449183.11e-143PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103491133
TrEMBLA0A1S3BLH21e-142A0A1S3BLH2_CUCME; LOW QUALITY PROTEIN: uncharacterized protein LOC103491133
STRINGXP_008449183.11e-142(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2448733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.13e-10C2H2 family protein