PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014060P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 247aa    MW: 26959.7 Da    PI: 9.3401
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014060P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.00014157179123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ C+k+F ++  L  H + H
  MELO3C014060P1 157 YKCNMCSKVFASPKALGGHKSGH 179
                     9*************998887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.01E-6154182No hitNo description
Gene3DG3DSA:3.30.160.607.3E-4154180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.723157184IPR007087Zinc finger, C2H2
PfamPF139124.7E-7157181IPR007087Zinc finger, C2H2
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDHNGNSLRI KIKIRNSDVP AAKVDDCNDN DCKKQFCSID HMGFDSETPM DKGLLFQAST  60
PMIIAATRGS SPSPSPTCDI VDCSKFLHSW PLTGRRGRKS ISSATTSSST TTTDTVVDVI  120
SSDRLNTKRV KTETHSDHEK SVRAKENKNN GVLEKKYKCN MCSKVFASPK ALGGHKSGHY  180
KANKTVIAIK KENANAAIGT TIEPKIMVST VALSTDRTDQ KSLVMDFDLN RLPPKEAILE  240
SCFLHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818600.0LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011652725.15e-41PREDICTED: putative protein TPRXL
TrEMBLA0A0A0L1Z96e-99A0A0A0L1Z9_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3108222