PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014250P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 447aa    MW: 49302.4 Da    PI: 9.5241
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014250P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.5e-0594116123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ C+k F r  nL+ H r H
  MELO3C014250P1  94 FICEVCNKGFQRDQNLQLHRRGH 116
                     89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.4E-693116IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.09E-693116No hitNo description
PfamPF121716.2E-594116IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.02694116IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.86694116IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
SMARTSM0035534138168IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-4161194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.09E-6168193No hitNo description
SMARTSM00355270173193IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MSGIDFSVSS NCIGEFGDHH RHQQQTSQLY HNHHHLLLPL NPNPIPNPII QNVDSSSSLP  60
PSLPKKKRNL PGKPDPDAEV IALSPNTLMA TNRFICEVCN KGFQRDQNLQ LHRRGHNLPW  120
KLRQRSSKEA VVVKKKVYIC PEKGCVHHDP SRALGDLTGI KKHYSRKHGE KKWKCEKCCK  180
KYAVQSDWKA HSKTCGTRDY KCDCGTLFSR KDSFITHRAF CDALAEESAK LISSVTSPNS  240
RLHFIANNNN NSIIKSQFLD HNFESSPLFP QILSPTDNLF QNSNQILSLN NKNNNHNPSK  300
TAIMNLTLSS FTHKQQQQQQ NVAAYDNSPS FRSVTGGGGG MSATALLLKA AQLGSTKSDD  360
NSFCSGSNSV GVVMSSSSSS KNISIETNGN YFGGKGNGLR DFFGRKELGE GNNDELIIPS  420
MEMTKFANSM SSEMGFSQFI GNNSVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35169233367Zinc finger protein JACKDAW
5b3h_F2e-35169233367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449264.10.0PREDICTED: protein indeterminate-domain 9
TrEMBLA0A1S3BM970.0A0A1S3BM97_CUCME; protein indeterminate-domain 9
STRINGXP_008449264.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-93C2H2-like zinc finger protein