PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014505P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 205aa    MW: 24144.4 Da    PI: 9.5707
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014505P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM137.86.8e-43211522127
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdk 90 
                      pGfrF Pt+eelv +yL+++++g + ++++vi+ vdiy++eP +L +    +++ ++++w+fF+k+++++a+g r+nr+t+  sgyWkatg+ +
  MELO3C014505P1  21 LPGFRFFPTEEELVLFYLHNQLQGWRKDIHRVIPVVDIYEIEPFNLSRysgeRCRRDSEQWFFFVKQQEREARGGRANRTTSsgSGYWKATGSPT 115
                     69***************************99***************8545665666788********************8876689********* PP

             NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                      v+s++++++g+kkt+vfy+g+ap+g+kt+W m+ey+
  MELO3C014505P1 116 YVYSSENRVIGVKKTMVFYRGKAPTGTKTKWKMNEYK 152
                     ************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-4519183IPR003441NAC domain
PROSITE profilePS5100544.06520184IPR003441NAC domain
PfamPF023651.8E-2122152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MKKKMDHEAI REEEEEEDQI LPGFRFFPTE EELVLFYLHN QLQGWRKDIH RVIPVVDIYE  60
IEPFNLSRYS GERCRRDSEQ WFFFVKQQER EARGGRANRT TSSGSGYWKA TGSPTYVYSS  120
ENRVIGVKKT MVFYRGKAPT GTKTKWKMNE YKAIQDIIPP HYPSSSTPIP QLRHEFSLCR  180
VYVVSGSFRA FDRRPLEVYN RSVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-3071823163NO APICAL MERISTEM PROTEIN
1ut4_B7e-3071823163NO APICAL MERISTEM PROTEIN
1ut7_A7e-3071823163NO APICAL MERISTEM PROTEIN
1ut7_B7e-3071823163NO APICAL MERISTEM PROTEIN
4dul_A7e-3071823163NAC domain-containing protein 19
4dul_B7e-3071823163NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818421e-173LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132591e-173LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449583.11e-152PREDICTED: NAC domain-containing protein 90
SwissprotQ9FMR34e-79NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A1S3BMD51e-151A0A1S3BMD5_CUCME; NAC domain-containing protein 90
STRINGXP_008449583.11e-151(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-81NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]