PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C014509P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 173aa MW: 19707.6 Da PI: 8.3092

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C014509P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	158.9	2.1e-49	17	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 + pGfrF+P+deel+ +yLkkk+eg++ ++ +vi+e++i+k+ePwdLp k + +e+ew+fFs+r +ky++g++++rat+ gyWkatgk+++v++ MELO3C014509P1 17 MFPGFRFSPKDEELILFYLKKKLEGSDDSV-DVISEIEICKFEPWDLPGKSRIpSENEWFFFSPRGRKYPNGTQNKRATELGYWKATGKERNVKT 110 579**********************999.99***********544433788*********************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e +g+k+tLvf+ grap+ge+t+W+mhey l MELO3C014509P1 111 -GSEIIGTKRTLVFHLGRAPTGERTEWIMHEYCL 143 .9****************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.02E-53	9	151	IPR003441	NAC domain
PROSITE profile	PS51005	49.682	17	172	IPR003441	NAC domain
Pfam	PF02365	6.1E-26	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MGGVSREAEM SMAALSMFPG FRFSPKDEEL ILFYLKKKLE GSDDSVDVIS EIEICKFEPW 60 DLPGKSRIPS ENEWFFFSPR GRKYPNGTQN KRATELGYWK ATGKERNVKT GSEIIGTKRT 120 LVFHLGRAPT GERTEWIMHE YCLNDKSQVN FKIFLSGFFS MNCYAICIIA GF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-45	12	169	15	165	NAC domain-containing protein 19
3swm_B	2e-45	12	169	15	165	NAC domain-containing protein 19
3swm_C	2e-45	12	169	15	165	NAC domain-containing protein 19
3swm_D	2e-45	12	169	15	165	NAC domain-containing protein 19
3swp_A	2e-45	12	169	15	165	NAC domain-containing protein 19
3swp_B	2e-45	12	169	15	165	NAC domain-containing protein 19
3swp_C	2e-45	12	169	15	165	NAC domain-containing protein 19
3swp_D	2e-45	12	169	15	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	0.0	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016900731.1	1e-106	PREDICTED: NAC domain-containing protein 40
Swissprot	Q9XIN7	6e-73	NAC40_ARATH; NAC domain-containing protein 40
TrEMBL	A0A1S4DXM3	1e-105	A0A1S4DXM3_CUCME; NAC domain-containing protein 40
STRING	XP_004170400.1	1e-105	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7315	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27300.1	3e-75	NTM1-like 8

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] Tian H, et al. NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1. Plant Physiol., 2017. 174(4): p. 2363-2375 [PMID:28649093]