PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C014527P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

YABBY

Protein Properties

Length: 173aa MW: 19150.7 Da PI: 10.1252

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C014527P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	226.9	5.1e-70	6	162	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +se+vCyv+CnfCntilavsvP +s+f++vtvrCGhC++llsvn+ + q+++ ++ +++ + +++ + +++ + ++s+ +s++ MELO3C014527P1 6 MASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDS--QQG--HKQQQVNAGDSSKDRAS--SSSSAKSTKIG 94 689*************************************************9997..222..22233333333333333..33333444444 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +l+++ +++ r+pp+ r +krqrvPsaynrfikeeiqrika+nPdishreafs+aaknWahfP+ihfgl MELO3C014527P1 95 SLDSSAERDQHRIPPI-R--QKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGL 162 5788889999998884.4..6**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.9E-72	7	162	IPR006780	YABBY protein
SuperFamily	SSF47095	8.9E-8	111	155	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.3E-5	116	156	IPR009071	High mobility group box domain
CDD	cd01390	6.76E-6	116	152	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MSLDMMASER VCYVHCNFCN TILAVSVPCN SMFTLVTVRC GHCSNLLSVN MGASLQVVPP 60 QDSQQGHKQQ QVNAGDSSKD RASSSSSAKS TKIGSLDSSA ERDQHRIPPI RQKRQRVPSA 120 YNRFIKEEIQ RIKAKNPDIS HREAFSTAAK NWAHFPHIHF GLKLDGNNKQ TK*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	3e-72	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	3e-72	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008449608.1	1e-113	PREDICTED: putative axial regulator YABBY 2
Refseq	XP_016900784.1	1e-113	PREDICTED: putative axial regulator YABBY 2
Swissprot	Q9XFB0	3e-71	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1S4DXR9	1e-111	A0A1S4DXR9_CUCME; putative axial regulator YABBY 2
STRING	XP_008449608.1	1e-112	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	2e-69	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]