PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014606P1
Common NameWIP1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 148aa    MW: 16965.2 Da    PI: 9.39
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014606P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.5e-056890123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C +Cgk F  + + ++H +++
  MELO3C014606P1 68 FTCRKCGKAFAVRGDWRTHEKNC 90
                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.25E-75488No hitNo description
Gene3DG3DSA:3.30.160.602.9E-66588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.1626895IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MHMWGHGSQY RKGPQSLRGT QPTAMLRLPC YCCAIGCRNN IDHPRSKPLK DFRTLQTHYK  60
RKHGMKPFTC RKCGKAFAVR GDWRTHEKNC GKLWHCTCGS DFKHKRSLKD HIKAFGLGHA  120
AYGIDDHHNH HHSFDNEDDD PASDIET*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8702740.0GQ870274.1 Cucumis melo WIP1 (WIP1) gene, complete cds.
GenBankGQ8702750.0GQ870275.1 Cucumis melo transposon Gyno-hAT putative transposase gene, complete cds; and WIP1 (WIP1) gene, complete cds.
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142226.21e-109PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY13e-86ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLD0UIX11e-108D0UIX1_CUCME; WIP1
STRINGXP_004142226.11e-108(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.13e-84C2H2 family protein
Publications ? help Back to Top
  1. Martin A, et al.
    A transposon-induced epigenetic change leads to sex determination in melon.
    Nature, 2009. 461(7267): p. 1135-8
    [PMID:19847267]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]