PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014645P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 184aa    MW: 20503.8 Da    PI: 9.7823
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014645P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.5e-18135170134
            GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C+  nC+t  Tp+WR+gp g+k+LCnaCG++yrk+ 
  MELO3C014645P1 135 CTnyNCNTNFTPMWRKGPLGPKSLCNACGIRYRKET 170
                     55559*****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.7E-12127172No hitNo description
SMARTSM004012.0E-11129181IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-13133174IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.1E-15135169IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.253139183IPR000679Zinc finger, GATA-type
CDDcd002022.09E-11139168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MDDLVVNEMN QMTANNQGLA RNNEMMSEPN YNPHQIVWSK DLKTYVLKSN NYGQLHPSSY  60
STTTHQAKPI ATSTPNNSTP NLPLPKKGHN NDLYTLLNPA SRISDDHEAE ASSGGRRKGS  120
RRRRASATND VERRCTNYNC NTNFTPMWRK GPLGPKSLCN ACGIRYRKET MNKEAMAAEN  180
SNG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011654362.11e-101PREDICTED: GATA transcription factor 29
TrEMBLA0A0A0L0J01e-100A0A0A0L0J0_CUCSA; Uncharacterized protein
STRINGXP_004162027.11e-98(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137781622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.19e-17GATA transcription factor 29