PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C014722P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 212aa    MW: 23711.4 Da    PI: 6.6688
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C014722P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.7e-173179355
             AP2  3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    + GVr+++ +g+WvAeI+d       +  r +lg+f taeeAa+a+++a+  l+g
  MELO3C014722P1 31 FVGVRQRP-SGKWVAEIKDaT-----HdIRMWLGTFNTAEEAARAYDEAACLLRG 79
                    78******.7*********44.....47**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.2E-363093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-283087IPR001471AP2/ERF domain
PROSITE profilePS5103219.6123087IPR001471AP2/ERF domain
PRINTSPR003674.9E-83142IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-193187IPR016177DNA-binding domain
PfamPF008474.5E-123179IPR001471AP2/ERF domain
CDDcd000183.54E-313186No hitNo description
PRINTSPR003674.9E-85369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MEGSVEKQER RDVAFKLVGK CIKKRSGKRS FVGVRQRPSG KWVAEIKDAT HDIRMWLGTF  60
NTAEEAARAY DEAACLLRGS NARTNFTLAS NSSSTLSFKI RNLLIHKITL KRSSITETHA  120
HVAHSETNQE THMFDNDTVW NSCNGEIEVG FCHFTHSCCH LPLGFNFDMD ESLSAPNGIT  180
EHLGNTYDDA FDTSSAQLDY TDFSSFFFVP T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-162992468ATERF1
3gcc_A1e-162992468ATERF1
5wx9_A3e-161996581Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818420.0LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008449953.11e-158PREDICTED: ethylene-responsive transcription factor RAP2-11
TrEMBLA0A1S3BN651e-157A0A1S3BN65_CUCME; ethylene-responsive transcription factor RAP2-11
STRINGXP_008449953.11e-158(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-27related to AP2 11