PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C014922P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 225aa MW: 25362.9 Da PI: 10.1255

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C014922P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	100.2	2.9e-31	16	136	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lp+G+rF Ptd+elv +yLk+kv + +l++ ++i+++di+ ++Pw Lp ++++ +fFsk+++ ++r++ g+Wk+ gk+k +ls MELO3C014922P1 16 LPVGYRFCPTDQELVAHYLKRKVFHLPLPA-SIIPDFDIFLTDPWALPG---DSKEKRFFFSKQKSF------SRRSAGCGIWKSIGKEKLILSP 100 799*************************.89***********3...345577888887664......5789999**********9 PP NAM 96 ..kgelvglkktLvfykgr.apkgektdWvmheyrl 128 ++lvg +ktLvf + + ++ + t+Wvmheyrl MELO3C014922P1 101 gpMNQLVGSRKTLVFSESKfCETKSATRWVMHEYRL 136 888899******7751455578******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.19E-37	12	163	IPR003441	NAC domain
PROSITE profile	PS51005	39.348	16	163	IPR003441	NAC domain
Pfam	PF02365	6.3E-23	17	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MDNISPFVLN GGSIRLPVGY RFCPTDQELV AHYLKRKVFH LPLPASIIPD FDIFLTDPWA 60 LPGDSKEKRF FFSKQKSFSR RSAGCGIWKS IGKEKLILSP GPMNQLVGSR KTLVFSESKF 120 CETKSATRWV MHEYRLPRSA SPTTPNSTQI EVGDWAVYSL FQKRRRPKRQ GVEEKQRLRE 180 AEEASILDLR VEDGWEFPQP SSSSSSGVTE VSSNADFKKS TAVV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-22	14	164	15	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-22	14	164	15	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-22	14	164	15	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-22	14	164	15	166	NO APICAL MERISTEM PROTEIN
3swm_A	5e-22	14	164	18	169	NAC domain-containing protein 19
3swm_B	5e-22	14	164	18	169	NAC domain-containing protein 19
3swm_C	5e-22	14	164	18	169	NAC domain-containing protein 19
3swm_D	5e-22	14	164	18	169	NAC domain-containing protein 19
3swp_A	5e-22	14	164	18	169	NAC domain-containing protein 19
3swp_B	5e-22	14	164	18	169	NAC domain-containing protein 19
3swp_C	5e-22	14	164	18	169	NAC domain-containing protein 19
3swp_D	5e-22	14	164	18	169	NAC domain-containing protein 19
3ulx_A	6e-22	12	164	11	169	Stress-induced transcription factor NAC1
4dul_A	4e-22	14	164	15	166	NAC domain-containing protein 19
4dul_B	4e-22	14	164	15	166	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	161	168	QKRRRPKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681857	1e-144	LN681857.1 Cucumis melo genomic scaffold, anchoredscaffold00023.
GenBank	LN713260	1e-144	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008450148.1	1e-159	PREDICTED: NAC domain-containing protein 83 isoform X2
TrEMBL	A0A1S3BPK5	1e-158	A0A1S3BPK5_CUCME; NAC domain-containing protein 83 isoform X2
STRING	XP_008450147.1	1e-147	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14000.1	1e-31	NAC domain containing protein 84