PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015164P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 398aa    MW: 43982.2 Da    PI: 5.9413
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015164P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH277.8e-09234256326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     +++C +far G+Ck G++CkF Hg
  MELO3C015164P1 234 YKPCLYFAR-GFCKNGSNCKFLHG 256
                     789******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.277231258IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-5233257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-6234256IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6234256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5235256IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MDAYEATTLV YAKIKNLEPE NASKIMGFLL IQDLGDKELI RLAFGPETLL HSLILKAKAH  60
LGFPLNSSSS TPSSPSPLNP IARPLNSNPF SQSSPRIPNN GFDLTKNPSS PSTTSSWSLS  120
GITNNVISPK SSPLLSYDSI RAAPFSMPPF MQHKNGFVDS EVIEEPQVND YLSFLNESSS  180
SRGEDLVDPR TELGRGLQNW TQSMDNADTP FHRRSYSASD VCFGSEDGGF GVGYKPCLYF  240
ARGFCKNGSN CKFLHGDFSD SVDPSAAIVG SPSKLEGLFD QREEFMRYKA AQQQRLATAS  300
ELMAGVSPSQ YNKYINFLLQ QQNENHRATA AALMMGDEYH KFGMSRSERN DFLALAAEKR  360
NSASRQIYLT FPADSTFKDE DVSEYFRGLR RLAIEVF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818070.0LN681807.1 Cucumis melo genomic scaffold, anchoredscaffold00024.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016900900.10.0PREDICTED: zinc finger CCCH domain-containing protein 46-like isoform X1
TrEMBLA0A1S4DYU90.0A0A1S4DYU9_CUCME; zinc finger CCCH domain-containing protein 46-like isoform X1
STRINGXP_008450391.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66967