PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015248P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 158aa    MW: 17900.9 Da    PI: 8.4875
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015248P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.7e-095681227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                    + ++C++f+ tG+C+yGd+Ck+ H++
  MELO3C015248P1 56 RPRICNRFLSTGFCQYGDSCKYFHPK 81
                    6799********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004513.6E-5338IPR003604Zinc finger, U1-type
SuperFamilySSF576671.19E-14452No hitNo description
PfamPF062201.5E-9536IPR013085Zinc finger, U1-C type
SuperFamilySSF902292.09E-75283IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-55481IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-75480IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.225582IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-75681IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTPF ARKRHLQSLS HQKAKALWFD SFKDSNQTFP HSFHFRPRIC  60
NRFLSTGFCQ YGDSCKYFHP KNNHNDNTHN SSSHPIAGFP ENNQPPNVPF NRFVDGNSSS  120
TGSLVSDRLG TSWGNLPPSL MPPPEGGYPP LPFVDWG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818061e-65LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132561e-65LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450521.11e-114PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ0JP113e-42C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A1S3BQ251e-112A0A1S3BQ25_CUCME; zinc finger CCCH domain-containing protein 3
STRINGXP_008450521.11e-113(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.17e-31C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]