PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015277P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 161aa    MW: 17520 Da    PI: 10.5335
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015277P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.11.4e-191951133
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33
                    C+ C+ttkTplWR gp g+k+LCnaCG+++rk+
  MELO3C015277P1 19 CVDCKTTKTPLWRGGPTGPKSLCNACGIRFRKR 51
                    *******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.2E-141365IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.85E-131668No hitNo description
Gene3DG3DSA:3.30.50.101.4E-151752IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.38E-141971No hitNo description
PROSITE profilePS5011412.5851967IPR000679Zinc finger, GATA-type
PROSITE patternPS0034401944IPR000679Zinc finger, GATA-type
PfamPF003202.4E-171951IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGFVDLSQKG LLLADTKCCV DCKTTKTPLW RGGPTGPKSL CNACGIRFRK RKIFTRRTNR  60
GGRDKKRERV RDNHSSTVAI VSATTTSSSG TTTTTTTTSG VDGDENSGEC GSSRMKIMMG  120
LEEDVMVVKK HRWQWQRKVG EEEKQAAVSL MALSNGSLIS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450587.11e-113PREDICTED: GATA transcription factor 16-like
TrEMBLA0A1S3BQ711e-112A0A1S3BQ71_CUCME; GATA transcription factor 16-like
STRINGXP_008450586.17e-96(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.16e-10GATA transcription factor 16