PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C015318P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NF-YB

Protein Properties

Length: 143aa MW: 16502.4 Da PI: 4.9402

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C015318P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	138.7	1.6e-43	12	100	7	95
NF-YB 7 flPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +lPianv rimkk++P+++kisk+ak+t+qec+ efisfvtsea+++c+ e+r+t+ngdd++wa+a+ G+++y+e + +yl+kyre+e+ MELO3C015318P1 12 ELPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQRCHYENRRTLNGDDICWAFASSGLDNYAEVFAKYLHKYREVER 100 69*************************************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.9E-41	6	132	IPR009072	Histone-fold
Pfam	PF00808	6.3E-26	12	75	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.61E-33	12	134	IPR009072	Histone-fold
PRINTS	PR00615	8.9E-14	40	58	No hit	No description
PRINTS	PR00615	8.9E-14	59	77	No hit	No description
PRINTS	PR00615	8.9E-14	78	96	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MENHNNGDEF LELPIANVER IMKKIIPQKG KISKEAKKTM QECANEFISF VTSEAAQRCH 60 YENRRTLNGD DICWAFASSG LDNYAEVFAK YLHKYREVER IKVDEYKCKI TQRLLPQDDD 120 DKEQEDNHRS IDGEIGETSS PN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	1e-33	13	97	9	93	NF-YB
4awl_B	1e-33	13	97	10	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	1e-33	13	97	10	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681806	0.0	LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008451142.1	1e-104	PREDICTED: nuclear transcription factor Y subunit B-4
Swissprot	O04027	2e-42	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A1S3BRX1	1e-102	A0A1S3BRX1_CUCME; nuclear transcription factor Y subunit B-4
STRING	XP_008451142.1	1e-103	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	8e-45	nuclear factor Y, subunit B4

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]