PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C015427P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 485aa MW: 54207.4 Da PI: 7.2554

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C015427P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.9	4.1e-36	62	204	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........ 79 lp+G++F+Ptd+el+ e+L++kv++k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ MELO3C015427P1 62 LPAGVKFDPTDQELI-EHLEAKVKSKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqgg 154 799**********.99*****5553344444434666646******.555666799**************73334555544 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l MELO3C015427P1 155 ETRWHKTGKTRPVMA-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 204 778********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-38	58	223	IPR003441	NAC domain
PROSITE profile	PS51005	33.19	62	223	IPR003441	NAC domain
Pfam	PF02365	2.2E-16	63	204	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MRNNNTKIVN PTIIGSGGSG GGSGGGSDSL LDAKLEQHQM CGSKHCPGCG HKLEGRPDWV 60 GLPAGVKFDP TDQELIEHLE AKVKSKDMKS HPLIDEFIPT IEGEDGICYT HPEKLPGVTR 120 DGLSRHFFHR PSKAYTTGTR KRRKIQTECD LQGGETRWHK TGKTRPVMAN GKQKGCKKIL 180 VLYTNFGKNR KPEKTNWVMH QYHLGQHEEE KEGELVVSKI FYQTQPRQCN WSERSLAAAE 240 GNFEVANLSR RETSAVTTGS CSSMTQADDV SPAATTGVGC SISSFSSMDI QHLKSDHFGF 300 VPFRTTFDDQ VGMEEGSTER KIGSKDGRGS GEFELRDHRH QRAAPLDHHH HQLVVAHDDH 360 HHHHSVVNHH LPTTTFHVTN PTHQISSIVI SPPPLLLLDH DSYHHHHHHH SPIILQNQPF 420 HQEEQQEEGE SEHHKMGGGR SASGLEELIM GCTSSSIKHQ PVSLSIYIHH YYFYSSFSFL 480 PLQY*

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MRNNNTKIVN PTIIGSGGSG GGSGGGSDSL LDAKLEQHQM CGSKHCPGCG HKLEGRPDWV  60
GLPAGVKFDP TDQELIEHLE AKVKSKDMKS HPLIDEFIPT IEGEDGICYT HPEKLPGVTR  120
DGLSRHFFHR PSKAYTTGTR KRRKIQTECD LQGGETRWHK TGKTRPVMAN GKQKGCKKIL  180
VLYTNFGKNR KPEKTNWVMH QYHLGQHEEE KEGELVVSKI FYQTQPRQCN WSERSLAAAE  240
GNFEVANLSR RETSAVTTGS CSSMTQADDV SPAATTGVGC SISSFSSMDI QHLKSDHFGF  300
VPFRTTFDDQ VGMEEGSTER KIGSKDGRGS GEFELRDHRH QRAAPLDHHH HQLVVAHDDH  360
HHHHSVVNHH LPTTTFHVTN PTHQISSIVI SPPPLLLLDH DSYHHHHHHH SPIILQNQPF  420
HQEEQQEEGE SEHHKMGGGR SASGLEELIM GCTSSSIKHQ PVSLSIYIHH YYFYSSFSFL  480
PLQY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	15	26	SGGSGGGSGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681806	0.0	LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008450799.1	0.0	PREDICTED: NAC transcription factor NAM-A1-like
Swissprot	Q9M0F8	1e-153	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A1S3BQR1	0.0	A0A1S3BQR1_CUCME; NAC transcription factor NAM-A1-like
STRING	XP_008450800.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4520	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-145	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]