PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015456P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 202aa    MW: 22315.7 Da    PI: 10.3508
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015456P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.2e-13136180347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + ++lG g+W+ I+r   ++Rt+ q+ s+ qky
   MELO3C015456P1 136 PWTEEEHRKFLIGLEKLGRGDWRGISRNYVTTRTPTQVASHAQKY 180
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.17129185IPR017930Myb domain
SuperFamilySSF466893.81E-18130185IPR009057Homeodomain-like
TIGRFAMsTIGR015579.3E-19132184IPR006447Myb domain, plants
SMARTSM007171.2E-9133183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-11133179IPR009057Homeodomain-like
PfamPF002495.7E-11136180IPR001005SANT/Myb domain
CDDcd001672.74E-9136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MVRKCSHCGN IGHNSRTCSN IRGSIITPNL NVGSNCGLIR LFGVHLDSYN SSSSTSSSTT  60
SSSSNASYSS TASAFSIKKS FSTDCLSSSS SSSSRIHIDN HHHHHHHLEH YSKSPSNGYL  120
SDGLLNGDQE RKKGVPWTEE EHRKFLIGLE KLGRGDWRGI SRNYVTTRTP TQVASHAQKY  180
FLRQSTLNKK NRRSSLFDMV K*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450841.11e-144PREDICTED: probable serine/threonine-protein kinase DDB_G0282963 isoform X1
RefseqXP_008450842.11e-144PREDICTED: transcription factor MYB1R1-like isoform X2
TrEMBLA0A1S3BPK21e-143A0A1S3BPK2_CUCME; transcription factor MYB1R1-like isoform X2
TrEMBLA0A1S3BR731e-143A0A1S3BR73_CUCME; probable serine/threonine-protein kinase DDB_G0282963 isoform X1
STRINGXP_008450841.11e-144(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.16e-42MYB_related family protein