PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C015488P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 364aa    MW: 40422 Da    PI: 10.2938
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C015488P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55e-13181226454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + ErrRR+++N++f+ L++llP+      +K +K ++L+ + eY++sL
  MELO3C015488P1 181 HHVISERRRREKLNDSFQALKSLLPPG-----TKKDKGSVLTTTREYMSSL 226
                     58899********************97.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-16174246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-11177231No hitNo description
PROSITE profilePS5088815.161177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10181226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.6E-17181244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-14183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MELPQPSTKS KLIPGPSSIP ILNPNTLSSS SSSLRSSSMD SPAESPFTTA DIPILQSQLQ  60
PSSINSIFAQ ARNLQFPTPE ALDEAMTRTI LAVLSSPACS SSSSVHQPLE NLPPSYHVNV  120
KSSAFKKYAR VLTPTKIRLN RNLSTRQSLL KRSLAFMTNL NLMRLRERMP TTSRPTSSQL  180
HHVISERRRR EKLNDSFQAL KSLLPPGTKK DKGSVLTTTR EYMSSLKAQV AELSRRNQQL  240
EAQLLQSSKE EEKEEAILFP REDIRFRVGI SQVQESTSEG QIIDLNIATR GESSSLTNIV  300
IGVLEFLRQL NNVRVLSMDG NTQLTPSSSS INHLTLRLII EENEWDKSAF QEAVERVVSD  360
LAK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185190ERRRRE
2186191RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008450873.10.0PREDICTED: putative transcription factor bHLH041 isoform X2
TrEMBLA0A1S3BQ940.0A0A1S3BQ94_CUCME; putative transcription factor bHLH041 isoform X2
STRINGXP_008450872.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-51bHLH family protein